rpms/perl-bioperl-run/devel perl-bioperl-run.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
Alex Lancaster (alexlan)
fedora-extras-commits at redhat.com
Thu Apr 19 21:51:14 UTC 2007
Author: alexlan
Update of /cvs/extras/rpms/perl-bioperl-run/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv32211/devel
Modified Files:
.cvsignore sources
Added Files:
perl-bioperl-run.spec
Log Message:
New import.
--- NEW FILE perl-bioperl-run.spec ---
Name: perl-bioperl-run
Version: 1.5.2_100
Release: 2%{?dist}
Summary: Modules to provide a Perl interface to various bioinformatics applications
Group: Development/Libraries
License: GPL or Artistic
URL: http://bioperl.org
Source0: http://bioperl.org/DIST/bioperl-run-%{version}.tar.bz2
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
BuildRequires: perl(Bio::Root::Version) >= 1.5.2
BuildRequires: perl(Algorithm::Diff) >= 1
BuildRequires: perl(XML::Parser::PerlSAX)
BuildRequires: perl(HTML::Parser)
BuildRequires: perl(Module::Build)
Requires: perl(:MODULE_COMPAT_%(eval "`%{__perl} -V:version`"; echo $version))
%description
Bioperl-run contain modules that provide a Perl interface to various
bioinformatics applications. This allows various applications to be
used with common Bioperl objects.
%prep
%setup -q -n bioperl-run-%{version}
# remove all execute bits from the doc stuff
find examples -type f -exec chmod -x {} 2>/dev/null ';'
chmod -x INSTALL INSTALL.PROGRAMS
# remove deprecated modules (reported upstream and will be removed in
# _101 tarball)
rm Bio/Tools/Run/Phylo/Forester/SDI.pm Bio/Tools/Run/JavaRunner.pm Bio/Tools/Run/AbstractRunner.pm
%build
%{__perl} Build.PL --installdirs vendor << EOF
n
a
EOF
./Build
%install
rm -rf $RPM_BUILD_ROOT
perl Build pure_install --destdir=$RPM_BUILD_ROOT
# remove some spurious files
find $RPM_BUILD_ROOT -type f -a \( -name .packlist \
-o \( -name '*.bs' -a -empty \) \) -exec rm -f {} ';'
# remove errant execute bit from the .pm's
find $RPM_BUILD_ROOT -type f -name '*.pm' -exec chmod -x {} 2>/dev/null ';'
# correct all binaries in /usr/bin to be 0755
find $RPM_BUILD_ROOT/%{_bindir} -type f -name '*.pl' -exec chmod 0755 {} 2>/dev/null ';'
%check
%{?_with_check:./Build test || :}
%clean
rm -rf $RPM_BUILD_ROOT
%files
%defattr(-,root,root,-)
## don't distribute "doc" "scripts" subdirectories, they don't contain docs
%doc examples
%doc AUTHORS Changes INSTALL INSTALL.PROGRAMS README
%{perl_vendorlib}/*
%{_mandir}/man3/*.3*
%{_bindir}/*
%{_mandir}/man1/*.1*
%changelog
* Tue Apr 18 2007 Alex Lancaster <alexl at users.sourceforge.net> 1.5.2_100-2
- Remove deprecated modules that depend on non-existent
Bio::Root::AccessorMaker
* Tue Apr 17 2007 Alex Lancaster <alexl at users.sourceforge.net> 1.5.2_100-1
- Initial Fedora package.
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl-run/devel/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore 19 Apr 2007 18:15:27 -0000 1.1
+++ .cvsignore 19 Apr 2007 21:50:37 -0000 1.2
@@ -0,0 +1 @@
+bioperl-run-1.5.2_100.tar.bz2
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl-run/devel/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources 19 Apr 2007 18:15:27 -0000 1.1
+++ sources 19 Apr 2007 21:50:37 -0000 1.2
@@ -0,0 +1 @@
+cc44c719820608f92139f4a81d472ea6 bioperl-run-1.5.2_100.tar.bz2
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