rpms/glimmer/devel glimmer.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2

[Christian Iseli (c4chris)]

Author: c4chris

Update of /cvs/extras/rpms/glimmer/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv16375

Modified Files:
	.cvsignore sources 
Added Files:
	glimmer.spec 
Log Message:
Import glimmer.spec.


--- NEW FILE glimmer.spec ---
Name:           glimmer
Version:        3.02
Release:        1%{?dist}
Summary:        System for finding genes in microbial DNA

Group:          Applications/Engineering
License:        Artistic
URL:            http://www.cbcb.umd.edu/software/glimmer
Source0:        http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires:       elph

%description
Glimmer is a system for finding genes in microbial DNA, especially the genomes
of bacteria, archaea, and viruses. Glimmer (Gene Locator and Interpolated
Markov ModelER) uses interpolated Markov models (IMMs) to identify the coding
regions and distinguish them from noncoding DNA.


%prep
%setup -q -n glimmer3.02
rm -f sample-run/g3-*
sed -i "s+/fs/szgenefinding/Glimmer3/bin+%{_libexecdir}/glimmer3+" scripts/g3-*
sed -i "s+/fs/szgenefinding/Glimmer3/scripts+%{_datadir}/glimmer3+" scripts/g3-*
sed -i "s+/nfshomes/adelcher/bin/elph+%{_bindir}/elph+" scripts/g3-*
sed -i "s/@ if/if/" src/c_make.gen


%build
make -C src %{?_smp_mflags} CXXFLAGS="$RPM_OPT_FLAGS"


%check


%install
rm -rf $RPM_BUILD_ROOT
mkdir -p $RPM_BUILD_ROOT%{_libexecdir}/glimmer3
mkdir -p $RPM_BUILD_ROOT%{_datadir}/glimmer3
mkdir -p $RPM_BUILD_ROOT%{_bindir}
install -m 755 scripts/g3-* $RPM_BUILD_ROOT/%{_bindir}
install -m 755 bin/[a-su-z]* $RPM_BUILD_ROOT%{_libexecdir}/glimmer3
install -m 755 scripts/*.awk $RPM_BUILD_ROOT%{_datadir}/glimmer3
ln -s ../libexec/glimmer3/glimmer3 $RPM_BUILD_ROOT/%{_bindir}/glimmer3


%clean
rm -rf $RPM_BUILD_ROOT


%files
%defattr(-,root,root,-)
%doc LICENSE glim302notes.pdf sample-run
%{_bindir}/*
%{_datadir}/glimmer3/
%{_libexecdir}/glimmer3/


%changelog
* Thu Feb 22 2007 Christian Iseli <Christian.Iseli at licr.org> 3.02-1
 - Import in Fedora devel.

* Fri Feb  9 2007 Christian Iseli <Christian.Iseli at licr.org> 3.02-0
 - Create spec file.


Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/glimmer/devel/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore	22 Feb 2007 13:41:28 -0000	1.1
+++ .cvsignore	22 Feb 2007 16:35:33 -0000	1.2
@@ -0,0 +1 @@
+glimmer302.tar.gz


Index: sources
===================================================================
RCS file: /cvs/extras/rpms/glimmer/devel/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources	22 Feb 2007 13:41:28 -0000	1.1
+++ sources	22 Feb 2007 16:35:33 -0000	1.2
@@ -0,0 +1 @@
+3e933b79c7d019eb48fa87b9fda1e1ee  glimmer302.tar.gz