rpms/openbabel/devel openbabel-gcc43.patch, 1.11, 1.12 openbabel.spec, 1.15, 1.16
Dominik Mierzejewski (rathann)
fedora-extras-commits at redhat.com
Mon Jan 7 22:20:50 UTC 2008
Author: rathann
Update of /cvs/pkgs/rpms/openbabel/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv22230
Modified Files:
openbabel-gcc43.patch openbabel.spec
Log Message:
- work around gcc bug: http://gcc.gnu.org/PR34708
openbabel-gcc43.patch:
Index: openbabel-gcc43.patch
===================================================================
RCS file: /cvs/pkgs/rpms/openbabel/devel/openbabel-gcc43.patch,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- openbabel-gcc43.patch 6 Jan 2008 21:04:29 -0000 1.11
+++ openbabel-gcc43.patch 7 Jan 2008 22:20:36 -0000 1.12
@@ -1,6 +1,6 @@
diff -up openbabel-2.1.1/src/dlhandler_unix.cpp.gcc43 openbabel-2.1.1/src/dlhandler_unix.cpp
--- openbabel-2.1.1/src/dlhandler_unix.cpp.gcc43 2007-04-14 02:34:11.000000000 +0200
-+++ openbabel-2.1.1/src/dlhandler_unix.cpp 2008-01-06 20:50:56.000000000 +0100
++++ openbabel-2.1.1/src/dlhandler_unix.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -25,6 +25,7 @@ GNU General Public License for more deta
#include <sys/stat.h>
#include <dlfcn.h>
@@ -11,7 +11,7 @@
diff -up openbabel-2.1.1/src/zipstreamimpl.h.gcc43 openbabel-2.1.1/src/zipstreamimpl.h
--- openbabel-2.1.1/src/zipstreamimpl.h.gcc43 2006-12-28 16:19:05.000000000 +0100
-+++ openbabel-2.1.1/src/zipstreamimpl.h 2008-01-06 19:28:16.000000000 +0100
++++ openbabel-2.1.1/src/zipstreamimpl.h 2008-01-07 23:15:46.000000000 +0100
@@ -31,6 +31,8 @@ Altered by: Geoffrey Hutchison 2005 for
minor namespace modifications, VC++ compatibility
*/
@@ -23,7 +23,7 @@
//*****************************************************************************
diff -up openbabel-2.1.1/src/residue.cpp.gcc43 openbabel-2.1.1/src/residue.cpp
--- openbabel-2.1.1/src/residue.cpp.gcc43 2007-01-05 17:29:49.000000000 +0100
-+++ openbabel-2.1.1/src/residue.cpp 2008-01-06 20:02:27.000000000 +0100
++++ openbabel-2.1.1/src/residue.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -26,6 +26,8 @@ obtained in part or whole from RasMol2 b
// File Includes
///////////////////////////////////////////////////////////////////////////////
@@ -35,7 +35,7 @@
#include <openbabel/residue.h>
diff -up openbabel-2.1.1/src/tokenst.cpp.gcc43 openbabel-2.1.1/src/tokenst.cpp
--- openbabel-2.1.1/src/tokenst.cpp.gcc43 2006-12-28 16:21:51.000000000 +0100
-+++ openbabel-2.1.1/src/tokenst.cpp 2008-01-06 20:33:49.000000000 +0100
++++ openbabel-2.1.1/src/tokenst.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -25,7 +25,7 @@ GNU General Public License for more deta
#include <algorithm>
#include <vector>
@@ -47,7 +47,7 @@
diff -up openbabel-2.1.1/src/obconversion.cpp.gcc43 openbabel-2.1.1/src/obconversion.cpp
--- openbabel-2.1.1/src/obconversion.cpp.gcc43 2007-07-01 21:16:17.000000000 +0200
-+++ openbabel-2.1.1/src/obconversion.cpp 2008-01-06 19:48:30.000000000 +0100
++++ openbabel-2.1.1/src/obconversion.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -37,6 +37,7 @@ GNU General Public License for more deta
#include <sstream>
#include <string>
@@ -58,7 +58,7 @@
diff -up openbabel-2.1.1/src/formats/rxnformat.cpp.gcc43 openbabel-2.1.1/src/formats/rxnformat.cpp
--- openbabel-2.1.1/src/formats/rxnformat.cpp.gcc43 2007-03-12 15:23:38.000000000 +0100
-+++ openbabel-2.1.1/src/formats/rxnformat.cpp 2008-01-06 21:27:56.000000000 +0100
++++ openbabel-2.1.1/src/formats/rxnformat.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -18,6 +18,8 @@ GNU General Public License for more deta
#pragma warning (disable : 4251) //
#endif
@@ -70,7 +70,7 @@
#include <openbabel/mol.h>
diff -up openbabel-2.1.1/src/formats/fchkformat.cpp.gcc43 openbabel-2.1.1/src/formats/fchkformat.cpp
--- openbabel-2.1.1/src/formats/fchkformat.cpp.gcc43 2007-03-12 18:42:23.000000000 +0100
-+++ openbabel-2.1.1/src/formats/fchkformat.cpp 2008-01-06 21:27:44.000000000 +0100
++++ openbabel-2.1.1/src/formats/fchkformat.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -12,6 +12,7 @@ GNU General Public License for more deta
***********************************************************************/
@@ -81,7 +81,7 @@
// #include <eigen/matrix.h>
diff -up openbabel-2.1.1/src/fingerprint.cpp.gcc43 openbabel-2.1.1/src/fingerprint.cpp
--- openbabel-2.1.1/src/fingerprint.cpp.gcc43 2007-06-02 15:56:31.000000000 +0200
-+++ openbabel-2.1.1/src/fingerprint.cpp 2008-01-06 19:17:45.000000000 +0100
++++ openbabel-2.1.1/src/fingerprint.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -21,7 +21,7 @@ GNU General Public License for more deta
#include <vector>
#include <algorithm>
@@ -91,9 +91,21 @@
#include <fstream>
#include <openbabel/fingerprint.h>
+diff -up openbabel-2.1.1/scripts/perl/openbabel_perl.cpp.gcc43 openbabel-2.1.1/scripts/perl/openbabel_perl.cpp
+--- openbabel-2.1.1/scripts/perl/openbabel_perl.cpp.gcc43 2007-07-01 22:14:02.000000000 +0200
++++ openbabel-2.1.1/scripts/perl/openbabel_perl.cpp 2008-01-07 23:18:45.000000000 +0100
+@@ -814,7 +814,7 @@ extern "C" {
+ * ----------------------------------------------------------------------------- */
+
+ SWIGINTERN const char*
+-SWIG_Perl_ErrorType(int code) {
++SWIG_Perl_ErrorType(int code) __attribute__((noinline)) {
+ const char* type = 0;
+ switch(code) {
+ case SWIG_MemoryError:
diff -up openbabel-2.1.1/include/openbabel/xml.h.gcc43 openbabel-2.1.1/include/openbabel/xml.h
---- openbabel-2.1.1/include/openbabel/xml.h.gcc43 2008-01-06 21:15:09.000000000 +0100
-+++ openbabel-2.1.1/include/openbabel/xml.h 2008-01-06 21:14:42.000000000 +0100
+--- openbabel-2.1.1/include/openbabel/xml.h.gcc43 2007-02-26 17:28:03.000000000 +0100
++++ openbabel-2.1.1/include/openbabel/xml.h 2008-01-07 23:15:46.000000000 +0100
@@ -13,6 +13,8 @@ MERCHANTABILITY or FITNESS FOR A PARTICU
GNU General Public License for more details.
***********************************************************************/
@@ -105,7 +117,7 @@
#include <openbabel/obmolecformat.h>
diff -up openbabel-2.1.1/include/openbabel/obconversion.h.gcc43 openbabel-2.1.1/include/openbabel/obconversion.h
--- openbabel-2.1.1/include/openbabel/obconversion.h.gcc43 2007-06-02 15:56:37.000000000 +0200
-+++ openbabel-2.1.1/include/openbabel/obconversion.h 2008-01-06 19:26:57.000000000 +0100
++++ openbabel-2.1.1/include/openbabel/obconversion.h 2008-01-07 23:15:46.000000000 +0100
@@ -28,6 +28,7 @@ GNU General Public License for more deta
#include <string>
#include <vector>
@@ -116,7 +128,7 @@
#include <openbabel/oberror.h>
diff -up openbabel-2.1.1/include/openbabel/data.h.gcc43 openbabel-2.1.1/include/openbabel/data.h
--- openbabel-2.1.1/include/openbabel/data.h.gcc43 2007-04-14 02:34:14.000000000 +0200
-+++ openbabel-2.1.1/include/openbabel/data.h 2008-01-06 19:03:06.000000000 +0100
++++ openbabel-2.1.1/include/openbabel/data.h 2008-01-07 23:15:46.000000000 +0100
@@ -23,7 +23,7 @@ GNU General Public License for more deta
#include <openbabel/babelconfig.h>
@@ -128,7 +140,7 @@
#include <string>
diff -up openbabel-2.1.1/include/openbabel/obmolecformat.h.gcc43 openbabel-2.1.1/include/openbabel/obmolecformat.h
--- openbabel-2.1.1/include/openbabel/obmolecformat.h.gcc43 2007-02-26 17:46:15.000000000 +0100
-+++ openbabel-2.1.1/include/openbabel/obmolecformat.h 2008-01-06 21:14:18.000000000 +0100
++++ openbabel-2.1.1/include/openbabel/obmolecformat.h 2008-01-07 23:15:46.000000000 +0100
@@ -23,6 +23,8 @@ GNU General Public License for more deta
#include <hash_map>
#endif
@@ -140,7 +152,7 @@
diff -up openbabel-2.1.1/include/openbabel/lineend.h.gcc43 openbabel-2.1.1/include/openbabel/lineend.h
--- openbabel-2.1.1/include/openbabel/lineend.h.gcc43 2007-06-02 15:56:39.000000000 +0200
-+++ openbabel-2.1.1/include/openbabel/lineend.h 2008-01-06 21:06:17.000000000 +0100
++++ openbabel-2.1.1/include/openbabel/lineend.h 2008-01-07 23:15:46.000000000 +0100
@@ -21,6 +21,7 @@ General Public License for more details.
#define OB_LINEEND_H
@@ -151,7 +163,7 @@
#define OBCONV
diff -up openbabel-2.1.1/tools/babel.cpp.gcc43 openbabel-2.1.1/tools/babel.cpp
--- openbabel-2.1.1/tools/babel.cpp.gcc43 2007-07-07 08:35:54.000000000 +0200
-+++ openbabel-2.1.1/tools/babel.cpp 2008-01-06 21:38:49.000000000 +0100
++++ openbabel-2.1.1/tools/babel.cpp 2008-01-07 23:15:46.000000000 +0100
@@ -35,6 +35,7 @@ GNU General Public License for more deta
#include <conio.h>
#endif
Index: openbabel.spec
===================================================================
RCS file: /cvs/pkgs/rpms/openbabel/devel/openbabel.spec,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- openbabel.spec 6 Jan 2008 21:17:13 -0000 1.15
+++ openbabel.spec 7 Jan 2008 22:20:36 -0000 1.16
@@ -5,7 +5,7 @@
Name: openbabel
Version: 2.1.1
-Release: 3%{?dist}
+Release: 4%{?dist}
Summary: Chemistry software file format converter
License: GPLv2
Group: Applications/File
@@ -147,6 +147,9 @@
%{python_sitearch}/openbabel*.egg-info
%changelog
+* Mon Jan 07 2008 Dominik Mierzejewski <rpm at greysector.net> 2.1.1-4
+- work around gcc bug: http://gcc.gnu.org/PR34708
+
* Sun Jan 06 2008 Dominik Mierzejewski <rpm at greysector.net> 2.1.1-3
- fix build with gcc-4.3
- include python egg-info
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