rpms/R-multtest/F-8 R-multtest.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2

[Pierre-YvesChibon (pingou)]

Author: pingou

Update of /cvs/pkgs/rpms/R-multtest/F-8
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv25055/F-8

Modified Files:
	.cvsignore sources 
Added Files:
	R-multtest.spec 
Log Message:



--- NEW FILE R-multtest.spec ---
%define packname multtest

Name:             R-%{packname}
Version:          1.18.0 
Release:          3%{?dist}
Summary:          Multiple hypothesis testing library from Bioconductor
Summary(fr):      Bibliothe que R de test multi-hypothèses

Group:            Applications/Productivity
License:          LGPLv2+ 
URL:              http://www.bioconductor.org/packages/2.1/bioc/html/multtest.html
Source0:          http://www.bioconductor.org/packages/2.1/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires:         R R-Biobase
Requires(post):   R
Requires(postun): R
BuildRequires:    R-devel >= 2.3.0 tetex-latex R-Biobase

%description
Non-parametric bootstrap and permutation resampling-based multiple testing
procedures for controlling the family-wise error rate (FWER), generalized 
family-wise error rate (gFWER), tail probability of the proportion of 
false positives (TPPFP), and false discovery rate (FDR). Single-step and 
step-wise methods are implemented. Tests based on a variety of t- and 
F-statistics (including t-statistics based on regression parameters from 
linear and survival models) are included. Results are reported in terms 
of adjusted p-values, confindence regions and test statistic cutoffs. 
The procedures are directly applicable to identifying differentially 
expressed genes in DNA microarray experiments.

This Library is a part of the Bioconductor (bioconductor.org) proejct.

%prep
%setup -c -q -n %{packname}

%build

%install
%{__rm} -rf %{buildroot}

chmod -x %{packname}/inst/doc/*
chmod -x %{packname}/src/*.c
chmod -x %{packname}/src/mt.h
chmod -x %{packname}/DESCRIPTION
%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/multtest.bib
%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/MTP.tex
%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/Rplots.ps


mkdir -p %{buildroot}%{_libdir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library

# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
%{__rm} -rf %{buildroot}%{_libdir}/R/library/R.css

chmod -x %{buildroot}%{_libdir}/R/library/%{packname}/otherDocs/*Rnw

%check
%{_bindir}/R CMD check %{packname}

%clean
%{__rm} -rf %{buildroot}

%post 
%{_R_make_search_index}

%postun 
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/latex/
%doc %{_libdir}/R/library/%{packname}/man/

%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/Meta/
%{_libdir}/R/library/%{packname}/R-ex/
%{_libdir}/R/library/%{packname}/R/
%{_libdir}/R/library/%{packname}/help/
%{_libdir}/R/library/%{packname}/libs/
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/data
%{_libdir}/R/library/%{packname}/otherDocs

%changelog
* Mon Jan 07 2008 Pingou <pingoufc4 at yahoo.fr> 1.18.0-3
- Change on the BR and the description

* Mon Jan 07 2008 Pingou <pingoufc4 at yahoo.fr> 1.18.0-2
- Correct error on the URL

* Tue Dec 04 2007 Pingou <pingoufc4 at yahoo.fr> 1.18.0-1
- Update to bioconductor 2.1 

* Wed Aug 29 2007 Pingou <pingoufc4 at yahoo.fr> 1.16.1-1
-  Update to 1.16.1

* Wed Aug 29 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-6
- Change the license tag

* Fri Jul 13 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-5
- Change in the R and BR section to fit the guidelines

* Tue Jul 10 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-4
- Change in post and postun to fit the packaging guidelines
- Change in the prep section to fir the guidelines

* Mon Jun 24 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-3
- Change de %%doc to avoid redundancy

*Wed May 23 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-2
- Add the %%check section

*Thu May 17 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-1
- Submitting to Fedora Extras

*Wed Apr 29 2007 Pingou <pingoufc4 at yahoo.fr> 1.14.0-0.1
-Build of the rpm


Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-multtest/F-8/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore	8 Jan 2008 03:33:31 -0000	1.1
+++ .cvsignore	9 Jan 2008 10:42:17 -0000	1.2
@@ -0,0 +1 @@
+multtest_1.18.0.tar.gz


Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-multtest/F-8/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources	8 Jan 2008 03:33:31 -0000	1.1
+++ sources	9 Jan 2008 10:42:17 -0000	1.2
@@ -0,0 +1 @@
+2a09d139ef362f0675c99e2e6d5ebe30  multtest_1.18.0.tar.gz