rpms/samtools/F-10 import.log, NONE, 1.1 samtools-0.1.5c-compilefix.patch, NONE, 1.1 samtools.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
ron
ron at fedoraproject.org
Sun Jul 12 19:13:26 UTC 2009
- Previous message (by thread): rpms/samtools/devel import.log, NONE, 1.1 samtools-0.1.5c-compilefix.patch, NONE, 1.1 samtools.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
- Next message (by thread): rpms/samtools/F-11 import.log, NONE, 1.1 samtools-0.1.5c-compilefix.patch, NONE, 1.1 samtools.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
- Messages sorted by:
[ date ]
[ thread ]
[ subject ]
[ author ]
Author: ron
Update of /cvs/pkgs/rpms/samtools/F-10
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv27130/F-10
Modified Files:
.cvsignore sources
Added Files:
import.log samtools-0.1.5c-compilefix.patch samtools.spec
Log Message:
Auto import of samtools.
--- NEW FILE import.log ---
samtools-0_1_5c-3_fc10:F-10:samtools-0.1.5c-3.fc10.src.rpm:1247425947
samtools-0.1.5c-compilefix.patch:
--- NEW FILE samtools-0.1.5c-compilefix.patch ---
diff -up samtools-0.1.5c/misc/Makefile.compilefix samtools-0.1.5c/misc/Makefile
--- samtools-0.1.5c/misc/Makefile.compilefix 2009-07-11 15:33:04.000000000 +0200
+++ samtools-0.1.5c/misc/Makefile 2009-07-11 15:33:22.000000000 +0200
@@ -1,6 +1,6 @@
CC= gcc
CXX= g++
-CFLAGS= -g -Wall -O2 -m64 #-arch ppc
+CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
--- NEW FILE samtools.spec ---
Name: samtools
Version: 0.1.5c
Release: 3%{?dist}
Summary: Tools for nucleotide sequence alignments in the SAM format
Group: Applications/Engineering
License: MIT
URL: http://samtools.sourceforge.net/
Source0: http://downloads.sourceforge.net/%{name}/%{name}-%{version}.tar.bz2
Patch0: samtools-0.1.5c-compilefix.patch
BuildRoot: %(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)
BuildRequires: zlib-devel >= 1.2.3
BuildRequires: ncurses-devel
%description
SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment. SAM tools provide efficient utilities on
manipulating alignments in the SAM format.
%prep
%setup -q
%patch0 -p1 -b .compilefix
%build
make CFLAGS="%{optflags}" samtools razip %{?_smp_mflags}
cd misc/
make CFLAGS="%{optflags}" %{?_smp_mflags}
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{_bindir}
install -p samtools razip %{buildroot}%{_bindir}
gzip samtools.1
mkdir -p %{buildroot}%{_mandir}/man1/
cp -p samtools.1.gz %{buildroot}%{_mandir}/man1/
cd misc/
install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl \
maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl samtools.pl \
soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl %{buildroot}%{_bindir}
%clean
rm -rf %{buildroot}
%files
%defattr(-,root,root,-)
%doc AUTHORS ChangeLog COPYING INSTALL NEWS source.dot examples/
%{_bindir}/*
%{_mandir}/man1/*
%changelog
* Sun Jul 12 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.5c-3
- Specfile cleanup.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.5c-2
- Fixed manpage location.
- Make sure optflags is passed to the makefiles.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.5c-1
- Initial build.
Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- .cvsignore 12 Jul 2009 16:58:23 -0000 1.1
+++ .cvsignore 12 Jul 2009 19:13:26 -0000 1.2
@@ -0,0 +1 @@
+samtools-0.1.5c.tar.bz2
Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- sources 12 Jul 2009 16:58:23 -0000 1.1
+++ sources 12 Jul 2009 19:13:26 -0000 1.2
@@ -0,0 +1 @@
+62551fbad3f7c63c52fad99c3baf8580 samtools-0.1.5c.tar.bz2
- Previous message (by thread): rpms/samtools/devel import.log, NONE, 1.1 samtools-0.1.5c-compilefix.patch, NONE, 1.1 samtools.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
- Next message (by thread): rpms/samtools/F-11 import.log, NONE, 1.1 samtools-0.1.5c-compilefix.patch, NONE, 1.1 samtools.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
- Messages sorted by:
[ date ]
[ thread ]
[ subject ]
[ author ]
More information about the fedora-extras-commits
mailing list