rpms/R-Biostrings/devel R-Biostrings.spec, NONE, 1.1 import.log, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
Pierre-YvesChibon
pingou at fedoraproject.org
Thu May 7 08:05:07 UTC 2009
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Author: pingou
Update of /cvs/pkgs/rpms/R-Biostrings/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv15037/devel
Modified Files:
.cvsignore sources
Added Files:
R-Biostrings.spec import.log
Log Message:
Original import
--- NEW FILE R-Biostrings.spec ---
%global packname Biostrings
%global BioC 2.4
%global Rvers 2.9.0
Name: R-%{packname}
Version: 2.12.1
Release: 2%{?dist}
Summary: String objects representing biological sequences
Group: Applications/Engineering
License: Artistic 2.0
URL: http://bioconductor.org/packages/%{BioC}/bioc/html/Biostrings.html
Source0: http://bioconductor.org/packages/%{BioC}/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R >= %{Rvers} R-methods R-utils R-IRanges >= 1.1.66 R-Biobase
Requires(post): R
Requires(postun): R
BuildRequires: R-devel tetex-latex R >= %{Rvers} R-methods R-utils R-IRanges-devel >= 1.1.66 R-Biobase
%description
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
%package devel
Summary: Development files for %{name}
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
%description devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
# architecture dependent package
mkdir -p %{buildroot}%{_libdir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css
# Empty file
rm -f %{buildroot}%{_libdir}/R/library/%{packname}/doc/GenomeSearching.R
%check
# Requires for R-BSgenome which cannot build without R-Biostring
#%{_bindir}/R CMD check %{packname}
%clean
rm -rf %{buildroot}
%post
%{_R_make_search_index}
%postun
%{_R_make_search_index}
%files
%defattr(-, root, root, -)
#i386 arch
%dir %{_libdir}/R/library/%{packname}/
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/latex/
%doc %{_libdir}/R/library/%{packname}/man/
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/extdata
%{_libdir}/R/library/%{packname}/data
%{_libdir}/R/library/%{packname}/libs
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/UnitTests
%{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/NAMESPACE
%files devel
%defattr(-,root,root,-)
%{_libdir}/R/library/%{packname}/include
%changelog
* Wed May 06 2009 pingou <pingou at pingoured.fr> 2.12.1-2
- Solve dependencies issue (Add R-Biobase as R and BR)
* Fri May 01 2009 pingou <pingou at pingoured.fr> 2.12.1-1
- Update to 2.12.1
* Tue Apr 28 2009 pingou <pingou at pingoured.fr> 2.12.0-1
- Update to Bioconductor 2.4 for R 2.9.0
* Fri Apr 03 2009 pingou <pingou at pingoured.fr> 2.11.47-1
- Update to the development version of bioconductor
* Wed Apr 01 2009 pingou <pingou -AT- pingoured.fr> 2.10.21-2
- Update URL to remove an unused macro
- Improve english in the comments
- Remove pkgconfig as BR of the -devel
* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 2.10.21-1
- initial package for Fedora
--- NEW FILE import.log ---
R-Biostrings-2_12_1-2_fc10:HEAD:R-Biostrings-2.12.1-2.fc10.src.rpm:1241683451
Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-Biostrings/devel/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- .cvsignore 6 May 2009 20:59:47 -0000 1.1
+++ .cvsignore 7 May 2009 08:04:37 -0000 1.2
@@ -0,0 +1 @@
+Biostrings_2.12.1.tar.gz
Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-Biostrings/devel/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- sources 6 May 2009 20:59:47 -0000 1.1
+++ sources 7 May 2009 08:04:37 -0000 1.2
@@ -0,0 +1 @@
+c7606b90617c5c86fa742a024277f618 Biostrings_2.12.1.tar.gz
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