rpms/R-BSgenome/F-11 R-BSgenome.spec, NONE, 1.1 import.log, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
Pierre-YvesChibon
pingou at fedoraproject.org
Wed May 20 06:42:48 UTC 2009
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Author: pingou
Update of /cvs/pkgs/rpms/R-BSgenome/F-11
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv22129/F-11
Modified Files:
.cvsignore sources
Added Files:
R-BSgenome.spec import.log
Log Message:
Original import
--- NEW FILE R-BSgenome.spec ---
%global packname BSgenome
%global BioC 2.4
Name: R-%{packname}
Version: 1.12.0
Release: 2%{?dist}
Summary: Infrastructure for Biostrings-based genome data packages
Group: Applications/Engineering
License: Artistic 2.0
URL: http://bioconductor.org/packages/%{BioC}/bioc/html/BSgenome.html
Source0: http://bioconductor.org/packages/%{BioC}/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
Requires: R R-methods R-IRanges R-Biostrings
Requires(post): R
Requires(postun): R
BuildRequires: R-devel tetex-latex R R-Biostrings-devel
BuildRequires: R R-methods R-IRanges
%description
Infrastructure shared by all the Biostrings-based genome data packages
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
# architecture independant package
mkdir -p %{buildroot}%{_datadir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_datadir}/R/library/R.css
%check
# The dependencies asked are:
# 1- only 'suggests'
# 2- really big
# 3- contain only 'metadata' no code
#%{_bindir}/R CMD check %{packname}
%clean
rm -rf %{buildroot}
%post
%{_R_make_search_index}
%postun
%{_R_make_search_index}
%files
%defattr(-, root, root, -)
%dir %{_datadir}/R/library/%{packname}/
%doc %{_datadir}/R/library/%{packname}/doc
%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
%doc %{_datadir}/R/library/%{packname}/html
%doc %{_datadir}/R/library/%{packname}/latex/
%doc %{_datadir}/R/library/%{packname}/man/
%{_datadir}/R/library/%{packname}/NAMESPACE
%{_datadir}/R/library/%{packname}/extdata
%{_datadir}/R/library/%{packname}/help
%{_datadir}/R/library/%{packname}/R
%{_datadir}/R/library/%{packname}/R-ex
%{_datadir}/R/library/%{packname}/CONTENTS
%{_datadir}/R/library/%{packname}/INDEX
%{_datadir}/R/library/%{packname}/Meta
%{_datadir}/R/library/%{packname}/BSgenomeDataPkg-template
%changelog
* Wed May 20 2009 pingou <pingou at pingoured.fr> 1.12.0-2
- The NAMESPACE file is not a doc
* Mon May 18 2009 pingou <pingou at pingoured.fr> 1.12.0-1
- Update to 1.12.0 for Bioconductor 2.4 and R 2.9.0
- Remove the dependency on R-Biobase which is not needed
* Wed Apr 01 2009 pingou <pingou at pingoured.fr> 1.10.5-2
- Add R-Biostrings-devel as BR
- Define and use the macro BioC for the bioconductor release
* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 1.10.5-1
- initial package for Fedora
--- NEW FILE import.log ---
R-BSgenome-1_12_0-2_fc10:F-11:R-BSgenome-1.12.0-2.fc10.src.rpm:1242801685
Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-BSgenome/F-11/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- .cvsignore 18 May 2009 23:43:56 -0000 1.1
+++ .cvsignore 20 May 2009 06:42:18 -0000 1.2
@@ -0,0 +1 @@
+BSgenome_1.12.0.tar.gz
Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-BSgenome/F-11/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- sources 18 May 2009 23:43:56 -0000 1.1
+++ sources 20 May 2009 06:42:18 -0000 1.2
@@ -0,0 +1 @@
+13ca2976599d6c264a8afc413dcac02f BSgenome_1.12.0.tar.gz
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