rpms/samtools/F-10 .cvsignore, 1.2, 1.3 import.log, 1.1, 1.2 samtools.spec, 1.1, 1.2 sources, 1.2, 1.3 samtools-0.1.5c-compilefix.patch, 1.1, NONE

ron ron at fedoraproject.org
Mon Nov 30 08:44:46 UTC 2009


Author: ron

Update of /cvs/pkgs/rpms/samtools/F-10
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv19253/F-10

Modified Files:
	.cvsignore import.log samtools.spec sources 
Removed Files:
	samtools-0.1.5c-compilefix.patch 
Log Message:
Updated to 0.1.7a


Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/.cvsignore,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -p -r1.2 -r1.3
--- .cvsignore	12 Jul 2009 19:13:26 -0000	1.2
+++ .cvsignore	30 Nov 2009 08:44:46 -0000	1.3
@@ -1 +1 @@
-samtools-0.1.5c.tar.bz2
+samtools-0.1.7a.tar.bz2


Index: import.log
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/import.log,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- import.log	12 Jul 2009 19:13:26 -0000	1.1
+++ import.log	30 Nov 2009 08:44:46 -0000	1.2
@@ -1 +1,2 @@
 samtools-0_1_5c-3_fc10:F-10:samtools-0.1.5c-3.fc10.src.rpm:1247425947
+samtools-0_1_7a-1_fc11:F-10:samtools-0.1.7a-1.fc11.src.rpm:1259570660


Index: samtools.spec
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/samtools.spec,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- samtools.spec	12 Jul 2009 19:13:26 -0000	1.1
+++ samtools.spec	30 Nov 2009 08:44:46 -0000	1.2
@@ -1,13 +1,12 @@
 Name:		samtools
-Version:	0.1.5c
-Release:	3%{?dist}
+Version:	0.1.7a
+Release:	1%{?dist}
 Summary:	Tools for nucleotide sequence alignments in the SAM format
 
 Group:		Applications/Engineering
 License:	MIT
 URL:		http://samtools.sourceforge.net/
 Source0:	http://downloads.sourceforge.net/%{name}/%{name}-%{version}.tar.bz2
-Patch0:		samtools-0.1.5c-compilefix.patch
 BuildRoot:	%(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)
 
 BuildRequires:	zlib-devel >= 1.2.3
@@ -21,7 +20,6 @@ manipulating alignments in the SAM forma
 
 %prep
 %setup -q
-%patch0 -p1 -b .compilefix
 
 
 %build
@@ -41,9 +39,10 @@ mkdir -p %{buildroot}%{_mandir}/man1/
 cp -p samtools.1.gz %{buildroot}%{_mandir}/man1/
 
 cd misc/
-install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl \
-  maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl samtools.pl \
-  soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl %{buildroot}%{_bindir}
+install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl	\
+    maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl sam2vcf.pl	\
+    samtools.pl soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl		\
+    %{buildroot}%{_bindir}
 
 
 %clean
@@ -52,12 +51,15 @@ rm -rf %{buildroot}
 
 %files
 %defattr(-,root,root,-)
-%doc AUTHORS ChangeLog COPYING INSTALL NEWS source.dot examples/
+%doc AUTHORS ChangeLog COPYING INSTALL NEWS examples/ samtools.txt
 %{_bindir}/*
 %{_mandir}/man1/*
 
 
 %changelog
+* Mon Nov 30 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.7a-1
+- Updated to 0.1.7a.
+
 * Sun Jul 12 2009 Rasmus Ory Nielsen <ron at ron.dk> - 0.1.5c-3
 - Specfile cleanup.
 


Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/samtools/F-10/sources,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -p -r1.2 -r1.3
--- sources	12 Jul 2009 19:13:26 -0000	1.2
+++ sources	30 Nov 2009 08:44:46 -0000	1.3
@@ -1 +1 @@
-62551fbad3f7c63c52fad99c3baf8580  samtools-0.1.5c.tar.bz2
+5e5aed8f0e0ec0009a3f0bb3e639c18b  samtools-0.1.7a.tar.bz2


--- samtools-0.1.5c-compilefix.patch DELETED ---




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