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Fedora 8 Update: perl-GO-TermFinder-0.82-2.fc8



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Fedora Update Notification
FEDORA-2008-4840
2008-06-03 04:29:10
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Name        : perl-GO-TermFinder
Product     : Fedora 8
Version     : 0.82
Release     : 2.fc8
URL         : http://search.cpan.org/dist/Go-TermFinder/
Summary     : Identify GO nodes that annotate a group of genes with a significant p-value
Description :
This package is intended to provide a method whereby the P-values of a set
of GO annotations can be determined for a set of genes, based on the number
of genes that exist in the particular genome (or in a selected background
distribution from the genome), and their annotation, and the frequency with
which the GO nodes are annotated across the provided set of genes. The
P-value is simply calculated using the hypergeometric distribution as the
probability of x or more out of n genes having a given annotation, given
that G of N have that annotation in the genome in general. We chose the
hypergeometric distribution (sampling without replacement) since it is more
accurate, though slower to calculate, than the binomial distribution
(sampling with replacement).

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This update can be installed with the "yum" update program.  Use 
su -c 'yum update perl-GO-TermFinder' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
GPG keys used by the Fedora Project can be found at
http://fedoraproject.org/keys
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