[Bug 464424] Review Request: GROMACS - a Molecular Dynamics package

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Thu Oct 2 12:21:51 UTC 2008


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https://bugzilla.redhat.com/show_bug.cgi?id=464424





--- Comment #26 from Jouni Väliaho <jounille at hotmail.com>  2008-10-02 08:21:50 EDT ---
(In reply to comment #25)
> (In reply to comment #24)
> > (In reply to comment #22)
> > > 
> > > Please post the failed test output from config.log. It builds fine in
> > > mock/devel-i386 and mock/f9-x86_64.
> > 
> > Ok. Something is probably wrong on my PC configuration.
> > Here are the config.log files:
> > 
> > http://bioinf.uta.fi/~java/gromacs/mpi-single/config.log
> 
> ./conftest: error while loading shared libraries: libmpi.so.0: cannot open
> shared object file: No such file or directory
> 
> Looks like your openmpi is not installed properly.

Thanks! You were right.

I removed openmpi-1.2.4-2.fc9.i386 and openmpi-libs-1.2.4-2.fc9.i386 packages.
I had to use --noscripts option because of error:
%preun(openmpi-1.2.4-2.fc9.i386) scriptlet failed, exit status 2 (bug?)
Then I reinstall then by yum install openmpi openmpi-libs
and now the gromacs builds properly.

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