[Bug 515081] Review Request: R-affy - Methods for Affymetrix Oligonucleotide Arrays

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https://bugzilla.redhat.com/show_bug.cgi?id=515081





--- Comment #10 from Jason Tibbitts <tibbs at math.uh.edu>  2009-08-19 15:56:33 EDT ---
That fails to compile for me.

gcc -m64 -std=gnu99 -I/usr/include/R -DHAVE_ZLIB=1  -I/usr/local/include
-I"/usr/lib64/R/library/preprocessCore/include"   -fpic  -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -c rma2.c -o rma2.o       
rma2.c:109:29: error: rma_background4.h: No such file or directory              
rma2.c:120:45: error: preprocessCore_background_stubs.c: No such file or
directory                                                        
rma2.c:121:48: error: preprocessCore_normalization_stubs.c: No such file or
directory                                                     
rma2.c:122:48: error: preprocessCore_summarization_stubs.c: No such file or
directory                                                     
rma2.c:124:31: error: R_subColSummarize.h: No such file or directory
rma2.c:125:37: error: R_subColSummarize_stubs.c: No such file or directory
rma2.c: In function 'do_RMA2':
rma2.c:134: warning: implicit declaration of function
'R_subColSummarize_medianpolish_log'
rma2.c:134: warning: assignment makes pointer from integer without a cast
rma2.c: In function 'rma_c_call':
rma2.c:186: warning: implicit declaration of function 'qnorm_c'
rma2.c: In function 'rma_c_complete':
rma2.c:247: warning: implicit declaration of function 'rma_bg_correct'
make: *** [rma2.o] Error 1
ERROR: compilation failed for package 'affy'

Scratch build: http://koji.fedoraproject.org/koji/taskinfo?taskID=1615456

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