rpms/perl-bioperl/devel .cvsignore, 1.4, 1.5 perl-bioperl.spec, 1.16, 1.17 sources, 1.5, 1.6

[Alex Lancaster]

Author: alexlan

Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv20254

Modified Files:
	.cvsignore perl-bioperl.spec sources 
Log Message:
- Update to 1.6.0 release candidate 2
- Remove filter for Bio::Graphics*, upstream removed them from the
  tarball



Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/.cvsignore,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- .cvsignore	28 Dec 2008 04:23:11 -0000	1.4
+++ .cvsignore	8 Jan 2009 06:48:43 -0000	1.5
@@ -1 +1 @@
-BioPerl-1.5.9_1.tar.bz2
+BioPerl-1.5.9_2.tar.bz2


Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- perl-bioperl.spec	28 Dec 2008 23:56:06 -0000	1.16
+++ perl-bioperl.spec	8 Jan 2009 06:48:43 -0000	1.17
@@ -1,12 +1,12 @@
 Name:           perl-bioperl
 Version:        1.5.9
-Release:        0.2.1%{?dist}
+Release:        0.3.2%{?dist}
 Summary:        Perl tools for computational molecular biology
 
 Group:          Development/Libraries
 License:        GPL+ or Artistic
 URL:            http://www.bioperl.org/
-Source0:        http://bioperl.org/DIST/BioPerl-%{version}_1.tar.bz2
+Source0:        http://bioperl.org/DIST/BioPerl-%{version}_2.tar.bz2
 Patch0:         bioperl-1.5.9-paths.patch
 BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
@@ -58,7 +58,7 @@
 many modules depend on each other to achieve a task.
 
 %prep
-%setup -q -n bioperl-%{version}._1
+%setup -q -n BioPerl-%{version}._2
 %patch0 -p1 
 
 # temporarily remove PhyloNetwork before compiling until upstream says
@@ -67,20 +67,17 @@
 rm -r Bio/PhyloNetwork*
 rm -r t/Tree/PhyloNetwork
 
-# Filter unwanted Requires:  Bio::Graphics
-cat << \EOF > %{_builddir}/bioperl-%{version}._1/%{name}-req
-#!/bin/sh
-%{__perl_requires} $* |\
-   sed -e '/perl(Bio::Graphics)/d; /perl(Bio::Graphics::Panel)/d'
-EOF
- 
-%define __perl_requires %{_builddir}/bioperl-%{version}._1/%{name}-req
-chmod +x %{__perl_requires}
-
 # these are the unwanted Requires for perl-bioperl-run, keeping in
 # case we need to do the temporary hack for bootstrapping again
 
+#cat << \EOF > %{_builddir}/BioPerl-%{version}._2/%{name}-req
+##!/bin/sh
+#%{__perl_requires} $* |\
 #   sed -e '/perl(Bio::Tools::Run::Alignment::Clustalw)/d; /perl(Bio::Tools::Run::GenericParameters)/d; /perl(Bio::Tools::Run::Phylo::Molphy::ProtML)/d; /perl(Bio::Tools::Run::Phylo::Phylip::Neighbor)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtDist)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtPars)/d; /perl(Bio::Tools::Run::RemoteBlast)/d'
+#EOF
+ 
+#%%define __perl_requires %{_builddir}/BioPerl-%{version}._2/%{name}-req
+#chmod +x %{__perl_requires}
 
 # remove all execute bits from the doc stuff
 find examples -type f -exec chmod -x {} 2>/dev/null ';'
@@ -125,13 +122,18 @@
 %defattr(-,root,root,-)
 ## don't distribute "doc" subdirectory,  doesn't contain docs
 %doc examples models 
-%doc AUTHORS BUGS Changes ChangeLog DEPRECATED INSTALL LICENSE PLATFORMS README
+%doc AUTHORS BUGS Changes DEPRECATED INSTALL LICENSE PLATFORMS README
 %{_bindir}/*
 %{perl_vendorlib}/*
 %{_mandir}/man1/*.1*
 %{_mandir}/man3/*.3*    
 
 %changelog
+* Wed Jan  7 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.3.2
+- Update to 1.6.0 release candidate 2
+- Remove filter for Bio::Graphics*, upstream removed them from the
+  tarball
+
 * Sun Dec 28 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.2.1
 - Filter unwanted Requires: Bio::Graphics and Bio::Graphics::Panel
   fixes broken deps until the .pl demo scripts remove them to the


Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- sources	28 Dec 2008 04:23:11 -0000	1.5
+++ sources	8 Jan 2009 06:48:43 -0000	1.6
@@ -1 +1 @@
-f7c85ef9cf175055eb56a097ae9d49b4  BioPerl-1.5.9_1.tar.bz2
+e01ce300592c8a5f7f1f1d2eba5405bc  BioPerl-1.5.9_2.tar.bz2