[Bug 537138] Bioperl doesn't bootstrap on other platforms, circular dependencies

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https://bugzilla.redhat.com/show_bug.cgi?id=537138





--- Comment #11 from Yaakov Nemoy <loupgaroublond at gmail.com>  2009-11-13 07:51:16 EDT ---
Follows is a list of the packages we had to rebuild to make this work. In
almost all cases we had to do a simple rebuild for epel. 'umc' means that we
applied our own patches. In this particular case, one of the tests was failing
and i need to attach an appropriate bug report. I googled the error and it
appears it might be a regression from a bug that was fixed in an earlier
version, but i'm not 100% what it is.

On that note, is there anything you fundamentally need todo to the spec file to
once and for all solve the bootstrap problem? If not, uncommenting and then
commenting code seems to work, and i feel this bug can be closed. Comments?

 perl-bioperl                 noarch  1.6.1-1.el5      centos-5-genomics  6.2 M
 libxml2                      x86_64  2.7.6-1.el5      centos-5-genomics  854 k
 libxml2-python               x86_64  2.7.6-1.el5      centos-5-genomics  519 k
 libxslt                      x86_64  1.1.26-1.el5     centos-5-genomics  546 k
 perl-Ace                     noarch  1.92-2.el5       centos-5-genomics  310 k
 perl-Bio-ASN1-EntrezGene     noarch  1.091-7.el5      centos-5-genomics   41 k
 perl-Convert-Binary-C        x86_64  0.74-1.el5       centos-5-genomics  294 k
 perl-Data-Stag               noarch  0.11-2.el5       centos-5-genomics  185 k
 perl-Math-Derivative         noarch  0.01-3.el5       centos-5-genomics  7.3 k
 perl-Math-Spline             noarch  0.01-2.el5       centos-5-genomics  8.4 k
 perl-PostScript              noarch  0.06-2.el5       centos-5-genomics   31 k
 perl-SVG                     noarch  2.44-1.el5       centos-5-genomics   82 k
 perl-SVG-Graph               noarch  0.02-1.el5       centos-5-genomics   96 k
 perl-Set-Scalar              noarch  1.23-2.el5       centos-5-genomics   38 k
 perl-XML-DOM-XPath           noarch  0.14-1.el5       centos-5-genomics   11 k
 perl-XML-LibXSLT             x86_64  1.68-3.el5       centos-5-genomics   54 k
 perl-XML-SAX                 noarch  0.96-2.el5       centos-5-genomics   78 k
 perl-XML-XPathEngine         noarch  0.11-1.el5       centos-5-genomics   40 k
 perl-umc-XML-LibXML          x86_64  1:1.69-3.el5     centos-5-genomics  375 k

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